2019
Treitli SC, Kolisko M, Husnik F, Keeling PJ, Hampl V (2019) Revealing the metabolic capacity of Streblomastix strix and its bacterial symbionts using single-cell metagenomics. PNAS doi.org/10.1073/pnas.1910793116
Salomaki ED , Kolisko M (2019) There Is Treasure Everywhere: Reductive Plastid Evolution in Apicomplexa in Light of Their Close Relatives Biomolecules 9 (8), 378
Mathur V, Kolísko M, Hehenberger E, Irwin NAT, Leander BS, Kristmundsson Á, Freeman MA, Keeling PJ (2019) Multiple Independent Origins of Apicomplexan-Like Parasites. Curr. Biol. 9:2936-2941
Adl SM, Bass D,, Lane CE, Lukeš J,, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW,, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M,, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S,, Kim E, Kolisko M, Kudryavtsev A,, Lahr DJG, Lara E,, Le Gall L, Lynn DH,, Mann DG,, Massana R, Mitchell EAD,, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q (2019) Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.
J Eukaryot Microbiol. 2019 66:4-119
2018
Del Campo J, Kolisko M, Boscaro V, Santoferrara LF, Nenarokov S, Massana R, Guillou L, Simpson AGB, Berney C, de Vargas C, Brown MW, Keeling PJ, Parfrey LW (2018) EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. PLoS Biol 16: doi.org/10.1371/journal.pbio.2005849
Pyrihová E, Motyčková A, Voleman L, Wandyszewska N, Fišer R, Seydlová G, Roger A, Kolísko M, Doležal P (2018) A Single Tim Translocase In The Mitosomes Of Giardia Intestinalis Illustrates Convergence Of Protein Import Machines In Anaerobic Eukaryotes. Genome Biol Evol doi.org/10.1093/gbe/evy215
Vacek V, Novak LVF, Treitli SC, Taborsky P, Cepicka I, Kolisko M, Keeling PJ, Hampl V (2018) Fe-S Cluster assembly in Oxymonads and related species. doi:10.1093/molbev/msy168
Mathur V, del Campo J, Kolisko M, Keeling PJ (2018) Global diversity and distribution of close relatives of apicomplexan parasites. Env. Microbiol. 20:2824-2833.
Heiss* AA, Kolisko* M, Ekelund F, Brown MW, Roger AJ, Simpson AGB (2018) Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes. Roy Soc Open Sci 5: 171707
Lynn DH, Kolisko M, Bourland W (2018) Phylogenomic Analysis of Nassula variabilis n.sp., Furgasonia blochmanni, and Pseudomicrothorax dubius Confirms a Nassophorean Clade. Protist 169:180-189.
2017
Lynn DH, Kolisko M (2017) Molecules illuminate morphology: phylogenomics confirms convergent evolution among ‘oligotrichous’ ciliates. Int J Syst Evol Microbiol 67: 3676-3682.
Del Campo J, James ER, Hirakawa Y, Fiorito R, Kolisko M, Irwin NAT, Mathur V, Boscaro V, Hehenberger E, Karnkowska A, Scheffrahn RH, Keeling PJ (2017) Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure. Sci Rep 7:16349.
Boscaro V, Kolisko M, Felletti M, Vannini C, Lynn DH, Keeling PJ (2017) Parallel genome reduction in symbionts descended from closely related free-living bacteria. Nat Ecol Evol 1:1160-1167.
Strassert JFH, Karnkowska A, Hehenberger E, Del Campo J, Kolisko M, Okamoto N,Burki F, Janouškovec J, Poirier C, Leonard G, Hallam SJ, Richards TA, Worden AZ, Santoro AE, Keeling PJ (2017) Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. ISME J 12:304-308
Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, HermanEK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, Kolisko M, Rachubinski RA, Schlacht A, Soanes DM, Tsaousis AD, Archibald JM, Ball SG, Dacks JB, Clark CG, van der Giezen M, Roger AJ (2017) Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. PLoS Biol 15: e2003769
Boscaro V, James ER, Fiorito R, Hehenberger E, Karnkowska A, Del Campo J, Kolisko M, Irwin NAT, Mathur V, Scheffrahn RH, Keeling PJ (2017) Molecular characterization and phylogeny of four new species of the genus Trichonympha (Parabasalia, Trichonymphea) from lower termite hindguts. Int J Syst Evol Microbiol 67: 3570-3575
Hehenberger E, Tikhonenkov DV, Kolisko M, Del Campo J, Esaulov AS, Mylnikov AP, Keeling PJ (2017) Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals. Curr Biol 27: 2043-2050
Leger* MM, Kolisko* M, Kamikawa* R, Stairs CW, Kume K, Čepička I, Silberman JD, Andersson JO, Xu F, Yabuki A, Eme L, Zhang Q, Takishita K, Inagaki Y, Simpson AGB, Hashimoto T and Roger AJ (2017) Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes. Nature Ecol Evol, 1:0092.
Gentekaki E, Kolisko M, Gong Y and Lynn D (2017) Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic. Mol Phylogenet and Evol, 106: 1-5.